PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G230000.1
Common NameB456_009G230000, LOC105771312
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 231aa    MW: 25624.1 Da    PI: 8.7141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G230000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-143885254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +++h+e+ErrRR+riN  f++Lr++lP+      +K +Ka+ L ++v+++++L
  Gorai.009G230000.1 38 CKSHKEAERRRRQRINAHFSTLRSVLPNT-----TKTDKASLLAEVVHHVREL 85
                        789*************************9.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1013685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-143690No hitNo description
PfamPF000106.7E-123885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-143990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-154093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-154291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.81E-7133199No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-8134197No hitNo description
CDDcd048732.19E-5136197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFPVKSFSGV ENNNSPVMLM EGEDSLKDLS ERKTMEACKS HKEAERRRRQ RINAHFSTLR  60
SVLPNTTKTD KASLLAEVVH HVRELKRQVE DVGRRDRDGC CSNSRPELDT SWPFPGECDE  120
ATLSFCDEGG KLLKATICCE DRPGLNHDLS RVIRLVQAKV VRAEMTTVGG RTKSVVVMQW  180
SGDEEQVGPL KRALKDVVEN RVSRLAQGTG SKRARVFGSN SETGHGFLVG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448186.11e-170PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0D2QLE31e-170A0A0D2QLE3_G
STRINGVIT_18s0001g07410.t015e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1885867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-35basic helix-loop-helix 32
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]